Yes, many Product Environmental Footprint (PEF) pilots have used data from Agri-footprint. For example, the following PEF-pilots: Beer, Red Meat, Animal feed, Dairy, Pasta and Pet food.
Agri-footprint data is not 100% PEF compliant because other background data are used for energy, transport, and some chemicals/materials. The difference in results of main environmental impacts such as GHG impact, fossil energy use, acidification and eutrophication is in most cases quite limited.